About the Institution

The Leibniz Institute for Research on Evolution and Biodiversity, Berlin is a research museum within the Leibniz Association. It is one of the most significant research museums worldwide focusing on biodiversity, evolution and geo-sciences. The zoological, paleontological and mineralogical collections of the Museum are directly linked to Research and comprise more than 30 million items. In addition, the Museum has an Animal Sounds Archive containing approximately 120,000 animal sound recordings and a DNA Bank. The Library of the MfN is one of the most important reference libraries in zoology in the German-speaking world. Research at the Leibniz Institute for Research on Evolution and Biodiversity is organised in four Science Programmes ("Forschungsbereiche"): Evolution and Geoprocesses, Collection Development and Biodiversity Discovery, Digital World and Information Science, Public Engagement with Science.


About the Data Center

MfN has a strong interest in collection and observational data, taxonomic data, and trait data. MfN curates the following data regularly:

  1. MfN collection related data, such as collection specimen data, DNA (DNA collection - exceeding MfN physical collection), collection metadata, and media representations of MfN collection specimens including additional metadata
  2. Research project related data (MfN involvement, leadership or partnership, national or international), such as observational data (e.g. ATBI)

Data Center Profile


Name

MfN – Leibniz Institute for Research on Evolution and Biodiversity, Berlin

URL

https://www.museumfuernaturkunde.berlin/en
Description

The GFBio Data Center MfN is administered and managed by the newly evolving Science Programme "Digital World and Information Science" at the MfN. The central data management system for the zoological and paleontological collections is Specify (see also here). MfN represents Germany in the DINA-Consortium aiming at building an open and modular collection data infrastructure on top of Specify6 for the needs of European institutions. Other data domains, e.g. mineralogical data, bibliographic data, and historical archive data, are managed by independent database instances. MfN's scientific multimedia files are managed internally using the commercial Digital Asset Management System Cumulus (Canto) and EasyDB (Programmfabrik) for 3D media. Important developments in the area of biodiversity informatics supported by MfN are ABCD 3.0, the ABCD extension EFG for paleontological and mineralogical collection data and its presentation layer, the GeoCASe portal, as well as the BioCASE Monitor Service (BMS), a tool for monitoring data provision and quality checks of individual ABCD(EFG) mappings.


Scientific data curation services (incl. taxonomic services)

The taxonomic and scientific expertise at MfN is that of its employed and associated scientists. Research is, to a large extent, based on our zoological, paleontological and mineralogical collections.

MfN curates the following data: (1) MfN collection related data, such as collection specimen data, DNA (DNA collection - exceeding MfN physical collection), collection metadata, and media representations of MfN collection specimens including additional metadata; (2) project related data (MfN involvement, leadership or partnership, national or international), such as observational data (e.g. ATBI).

MfN is an active provider of scientific data and media to international (scientific) platforms and networks, such as Global Biodiversity Information Facility (GBIF,  www.gbif.org), Europeana ( www.europeana.eu), GeoCASe ( www.geocase.eu), DNA Bank Network ( www.dnabank-network.org) / Global Genome Biodiversity Network (GGBN,  www.dnabank-network.org), and BHL-Europe ( www.bhl-europe.eu).

MfN is also providing a number of Data Services to the community:

Fauna Europaea: MfN is currently hosting Fauna Europaea ( www.fauna-eu.org), an information system and taxonomic service for all species currently known in Europe.

GBIF: MfN is responsible for the GBIF-D nodes "Insekten" and "Fossilien" and thus part of the German contribution to   GBIF International. This task entails hosting, mobilization and provision of biodiversity data to GBIF for other German (entomological and paleontological) collections.

GeoCASe: MfN is hosting and maintaining the Geosciences Collection Access Service (GeoCASe, www.geocase.eu), a service based on the ABCD extension EFG for the retrieval of collection data related to geo-scientific collection throughout Europe.

GloBIS: MfN is hosting, maintaining and managing the Global Butterfly Information System (GloBIS, www.globis.insects-online.de), a taxonomic backbone for the butterfly families Papilionidae (Swallowtails) and Pieridae (Whites).

ATBI+M: MfN is hosting and maintaining the site All Taxa Biodiversity Inventories + Monitoring in the Mercantour and Alpi Marittime natural parks ( www.atbi.eu/mercantour-marittime), a database on all observed species occurring in a defined area including information on the collection event, abundance and biology. The data originates from the EDIT project.

anymals+plants: MfN collaborated in the development of the Smartphone App anymals+plants ( www.anymals.org), which allows users to document species occurrences/ observations and also provides the user generated data to GBIF.

Open Drawer Portal: MfN will host, maintain and manage an international (insect) drawer portal ( eos.naturkundemuseum-berlin.de), which enables scientific and non-scientific users for cross-institutional searching digital representations and metadata of collection objects stored in drawers (mainly insects).

Data domains (scope)

MfN has a strong interest in collection and observational data, taxonomic data, and trait data.

Target group

Service Description

Data archiving for research projects is focusing on:

Type 1

Occurrence data and associated media originating from zoological, environmental and paleontological studies.

Type 2

A data type driven focus (independent from scientific domain) will be on archiving multi-media objects, traits, taxonomic and observation data, e.g. originating from Citizen Science initiatives (MfN - extended profile).


IT services

Data submission and accession

Data integration and management

  • bulk import scripts for Specify 6
  • imageJ macro for multiple QR code detection
  • ODK Collect forms for collection management via QR codes

Data backup and archiving

  • Backup and archiving facilities for data and multimedia files.

Data publication

User services

German representative in the DINA Consortium; specify workshop organisation (in Germany)

Service LevelsData Set xData Package x Data management xResearch Objects x
Data  Formats

Data Submission Formats

DataPre-structured, delimited plain-text files (CSV) and spreadsheet files (Microsoft Excel, Open Document Spreadsheet); SQL dump files; Binary files (e.g. images, audio, volume data); All submissions preferably in open formats Example templates for data submission can be found in the GFBio collection of recommended data submission templates
MetadataEML, ABCD, DarwinCore

Data Accessibility

Public access pointsGFBio, BioCASe Data Access Services at the MfN, Institutional landing pages of citable stable URIs,  BioCASe, GBIF,  BiNHum, GeoCASE, Europeana
Standardised exchange formatsXML-files in ABCD, DarwinCore, EML standard
Data formatsText, CSV, XML
Long-term availabilityUnlimited (minimum guaranteed time period of 15 years)

Data Publication Services

Data CitationYes (DOI and citation for each individual data set)
DOIDOIs are issued for each data set
Archiving (RAW-data ingest, data, media)


Licenses / Terms of Use

Metadata



Data


Documentation

Computing center, external service provider

name of the associated computing center(s), (commercial) service provider(s) and services provided


Backupregularly for the main databases


Your contact persons at MfN

Data curator

  • Caitlin Thorn

Technical contact

  • Falko Glöckler, Caitlin Thorn

NFDI contact persons

  • Christian Bölling, Falko Glöckler, Caitlin Thorn, Mareike Petersen



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