ABCD 2.06 as standard for data publication with GFBio consensus elements and GFBio use case
The GFBio initiative agreed to have the following ABCD 2.06 core elements as mandatory or recommended for datasets with biodiversity occurrence data, see XML dokumentation of ABCD 2.06.
All biodiversity & collection datasets to be published via the GFBio portal have to deliver information which is transfored to Pansimple and processed for the GFBio harvesting tool. The table below lists the elements for dissemination of "datasets" with "data records (= units)" structured according to ABCD. The document will be extended within the next years and modified following new ratified versions of ABCD.
The GFBio controlled vocabularies for Kingdom (=Regnum) and RecordBasis are provided by the API of the GFBio Terminology Service.
ABCD MANDATORY | Elements are mandatory within ABCD. |
| GFBIO MANDATORY | ABCD elements are agreed to be mandatory within GFBio. |
| HIGHLY RECOMMENDED | Elements are highly recommended and are mapped by the data centers (using the BioCASe provider software). They are normally included in quality datasets for GFBio dissemination. In some cases, however, the content might not exist or be irrelevant and can be omitted. |
RECOMMENDED | ABCD elements are not mandatory but recommended. |
FUTURE | Elements do not exist in ABCD 2.0; are recommended as new ABCD elements in ABCD 3.xx. |
| SUBMISSION | Elements are mandatory for a ABCD and EML compliant GFBio submission tool on dataset level. |
| ABCD (2.06) | ||||
|---|---|---|---|---|
| Element Group | Priority/Relevance | ABCD Element | Comments | Example dataset 1, GFBio Data Portal: Search for LIB Schneeberg |
| Dataset IDs | GFBIO MANDATORYSUBMISSION | Globally Unique Identifier | id.zfmk.de/dataset_ZFMK/270001 | |
| Dataset IDs | HIGHLY RECOMMENDED | exists in the ABCD variants 2.06d, 2.06e or 2.06f | - | |
| Technical Contacts | ABCD MANDATORYSUBMISSION | LIB Biodiversity Datacenter | ||
| Technical Contacts | GFBIO MANDATORY | datacenter@leibniz-lib.de | ||
| Content Contacts | ABCD MANDATORYSUBMISSION | Prof. Dr. R. Beutel | ||
| Description | ABCD MANDATORYSUBMISSION | Collection of specimens from descriptive data of head structures in Diptera | ||
| Description | GFBIO MANDATORY | Detailed description of the data set from the thesis of Dr. rer. nat. Katharina Schneeberg: The evolution of head structures in Diptera and the phylogeny of the order, Friedrich-Schiller-Universität Jena (2014) as part of the DFG project The Evolution of larval and adult features in Diptera (Insecta). DFG RB 1789/6 | ||
| Description | GFBIO MANDATORYSUBMISSION | URL of dataset landing page | ||
| Revision | ABCD MANDATORY | 2016-05-10 09:27:07 | ||
| IPRStatements | HIGHLY RECOMMENDED | CC BY-SA 4.0 | ||
| IPRStatements | RECOMMENDED | |||
| IPRStatements | RECOMMENDED | https://creativecommons.org/licenses/by-sa/4.0/ | ||
| IPRStatements | HIGHLY RECOMMENDED | |||
| IPRStatements | HIGHLY RECOMMENDED | see also GFBio Consensus Document for citation pattern of ABCD datasets | Schneeberg, K. (2014). The evolution of head structures in Diptera and the phylogeny of the order. PhD Thesis, Friedrich-Schiller-Universität Jena. [Dataset]. Version: 1.3. Data Publisher: LIB Biodiversity Datacenter. https://doi.org/10.20363//UJDIP.PHYLCOLL.ALL.V1. | |
| IPRStatements | RECOMMENDED | |||
| IPRStatements | RECOMMENDED | |||
| Unit IDs | GFBIO MANDATORY | Uni Jena | ||
| Unit IDs | GFBIO MANDATORY | UJ-Diptera | ||
| Unit IDs | GFBIO MANDATORY | UJ-DIP-Phylcoll-10000000 | ||
| Unit IDs | RECOMMENDED | 2016-05-09T11:33:45 | ||
| Owner | HIGHLY RECOMMENDED | Friedrich-Schiller-Universität Jena, Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Museum | ||
| Owner | HIGHLY RECOMMENDED | |||
| Owner | RECOMMENDED | principle investigator | ||
| Identification | HIGHLY RECOMMENDED | Within GFBio it is mandatory for taxon-based biological data to specify at least the regnum (=Kingdom) with the corresponding term from this list of terms and definitions for the kingdoms. | Animalia | |
| Identification | HIGHLY RECOMMENDED | Corresponding rank to HigherTaxonName. The values are controlled via the ABCD schema. | regnum | |
| Identification | HIGHLY RECOMMENDED | Axymyia furcata Mcatee, 1921 | ||
| RecordBasis | GFBIO MANDATORY | Use values from this list of terms and definitions. | PreservedSpecimen | |
| MultiMedia | GFBIO MANDATORY | |||
| MultiMedia | HIGHLY RECOMMENDED | |||
| MultiMedia | HIGHLY RECOMMENDED | |||
| MultiMedia | RECOMMENDED | |||
| MultiMedia | RECOMMENDED | |||
| MultiMedia | HIGHLY RECOMMENDED | |||
| Gathering | HIGHLY RECOMMENDED | in palaeontological and geological units often not available | 2008-09-04 | |
| Gathering | RECOMMENDED | Schneeberg, K. | ||
| Gathering | RECOMMENDED | Great Smoky Mountains National Park | ||
| Gathering | HIGHLY RECOMMENDED | for marine areas see element "AreaName" | United States | |
| Gathering | US | |||
| Gathering | HIGHLY RECOMMENDED | alternative to country; applicable in marine areas | ||
| Gathering | RECOMMENDED | |||
| Gathering | RECOMMENDED | |||
| Gathering | RECOMMENDED | only applicable if coordinates are present, then mandatory | ||
| Gathering | HIGHLY RECOMMENDED | for palaeontological and geological units | ||
| Gathering | HIGHLY RECOMMENDED | for palaeontological and geological units | ||
| RecordURI | GFBIO MANDATORY | URL of the landing page of the data record | http://id.zfmk.de/collection_ZFMK/223994677/1074973/211200 | |
| Other notable Elements | ||||
| Scope | RECOMMENDED | |||
| Unit IDs | RECOMMENDED | for collection object stable identifiers and stable URIs of existing landing pages on UnitLevel | http://id.zfmk.de/collection_ZFMK/10000000/998153/200892 | |
| TitleCitation (Unit) | RECOMMENDED | |||
| CollectorsFieldNumber (Unit) | RECOMMENDED | |||
| MeasurementsAndFacts | RECOMMENDED | |||
| Association | RECOMMENDED | |||
| Association | RECOMMENDED | recommended if AssociatedUnitID exists | ||
| Association | RECOMMENDED | recommended if AssociatedUnitID exists | ||
| Association | RECOMMENDED | recommended if AssociatedUnitID exists | ||
potential future elements | ||||
| Related Dataset | FUTURE | RelatedDataset-Name | requested element, not yet implemented | |
| Related Dataset | FUTURE | RelatedDataset-URL | requested element, not yet implemented | |
| Related Dataset GUID (to be mapped on unit level) | FUTURE | RelatedDatasetGUID | requested element, not yet implemented | - |
| Related Dataset ID (to be mapped on unit level) | FUTURE | RelatedDatasetID | requested element, not yet implemented | - |